miRBase entry: dps-mir-2520

Stem-loop dps-mir-2520


Accession
MI0011653
Description
Drosophila pseudoobscura dps-mir-2520 precursor miRNA


Sequence

gggaguugauuucaagaacggaucguaguacugaucgagacgcuugcuacuggagaauucgacuuccAAUAGCAACGCCCUUUCGAUUAGUucugcaaucaaaaaaagcaucgcauacca
((....((((..........(((.((((.(((((((((((.((((((((.(((((........))))).)))))).))..))))))))))).)))).))).........))))....)).

Structure
-  gagu    uucaagaacg   c    u           -c  -      c     aau 
 gg    ugau          gau guag acugaucgaga  gc uugcua uggag   u
 ||    ||||          ||| |||| |||||||||||  || |||||| |||||    
 cc    gcua          cua cguc UGAUUAGCUUU  CG AACGAU Accuu   c
a  auac    -cgaaaaaaa   a    u           CC  C      A     cag 


Annotation confidence Not enough data
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Genome context
XL_group1e: 8362599-8362718 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from dps-mir-2520
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2520

Accession MIMAT0012308
Description Drosophila pseudoobscura dps-miR-2520 mature miRNA
Sequence 68 - AAUAGCAACGCCCUUUCGAUUAGU - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9