miRBase entry: dps-mir-2516

Stem-loop dps-mir-2516


Accession
MI0011647
Description
Drosophila pseudoobscura dps-mir-2516 precursor miRNA


Sequence

gcccccuccuuuauaagggcucgugucggugcucaccguucccuguaacggUGCCUUACAUGGGCCCGUGGaacggc
(((...(((.......((((((((((.((.((..((((((......)))))))))).))))))))))..)))..)))

Structure
   ccc   uuuauaa          c  u  uc      cc 
gcc   ucc       gggcucgugu gg gc  accguu  c
|||   |||       |||||||||| || ||  ||||||   
cgg   aGG       CCCGGGUACA UC CG  Uggcaa  u
   -ca   -----UG          U  -  --      ug 


Annotation confidence Not enough data
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Genome context
Unknown_group_304: 5619-5695 [+]

Database links

Mature dps-miR-2516

Accession MIMAT0012303
Description Drosophila pseudoobscura dps-miR-2516 mature miRNA
Sequence 52 - UGCCUUACAUGGGCCCGUGG - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9