miRBase entry: dps-mir-2518-3

Stem-loop dps-mir-2518-3


Accession
MI0011643
Description
Drosophila pseudoobscura dps-mir-2518-3 precursor miRNA


Sequence

cggccaacgggcagccacacacacacacacgaccggaucgaacccguugcgaaucgaacuugguuugaguUCGAGCAGCGGGUCGAUCCGAGCcauagcccagcc
.(((....((((..................(..((((((((.((((((((...((((((((.....))))))))))))))))))))))))..)....)))).)))

Structure
c   caac    agccacacacacacacac ac        a        gaa        g 
 ggc    gggc                  g  cggaucga cccguugc   ucgaacuu g
 |||    ||||                  |  |||||||| ||||||||   |||||||| u
 ccg    cccg                  C  GCCUAGCU GGGCGACG   AGCUugag u
-   ---a    --------------auac GA        -        ---        u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown_group_82: 18123-18227 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dps-mir-2518-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-2518

Accession MIMAT0012301
Description Drosophila pseudoobscura dps-miR-2518 mature miRNA
Sequence 71 - UCGAGCAGCGGGUCGAUCCGAGC - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9