miRBase entry: dps-mir-1000

Stem-loop dps-mir-1000


Accession
MI0011615
Description
Drosophila pseudoobscura dps-mir-1000 precursor miRNA


Sequence

ggcgcuugccauugAUAUUGUCCUGUCACAGCAGUAuuguaacuuaauuauagccuaCUGCUGGGUCGGGGCAUUAACAuuguugagcgcc
((((((((.((.((.((.(((((((.(.((((((((((((((.....))))))..)))))))).).))))))).)).)).)).))))))))

Structure
        c  u  A  U       U A        --      c 
ggcgcuug ca ug UA UGUCCUG C CAGCAGUA  uuguaa u
|||||||| || || || ||||||| | ||||||||  |||||| u
ccgcgagu gu AC AU ACGGGGC G GUCGUCau  gauauu a
        u  u  A  U       U G        cc      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
2: 21158172-21158262 [-]

Database links

Mature dps-miR-1000-5p

Accession MIMAT0012265
Description Drosophila pseudoobscura dps-miR-1000-5p mature miRNA
Sequence 15 - AUAUUGUCCUGUCACAGCAGUA - 36
Evidence experimental
Illumina [1]

Mature dps-miR-1000-3p

Accession MIMAT0012266
Description Drosophila pseudoobscura dps-miR-1000-3p mature miRNA
Sequence 58 - CUGCUGGGUCGGGGCAUUAACA - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9