miRBase entry: dps-mir-959

Stem-loop dps-mir-959


Accession
MI0011611
Description
Drosophila pseudoobscura dps-mir-959 precursor miRNA


Sequence

uuuuguuuugguucuauguucUUAGUACUUGGGUUGAUAAAGAccacucguagugugagaagccuUUGUCAUCGCGGGUAUUAUGCAacauagcucaaaagcgcaacaaaau
(((((((.((.((((((((((.(((((((((.(.((((((((.(..((((.....))))..).)))))))).).))))))))).).))))))).....)).)).))))))).

Structure
-       u  g  -----       - U         G U        A ca    u 
 uuuuguu ug uu     cuauguu c UAGUACUUG G UGAUAAAG c  cucg a
 ||||||| || ||     ||||||| | ||||||||| | |||||||| |  |||| g
 aaaacaa gc aa     gauacaA G AUUAUGGGC C ACUGUUuc g  gagu u
u       c  g  aacuc       C U         G U        c aa    g 


Annotation confidence Not enough data
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Genome context
4_group4: 3182613-3182724 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dps-mir-959
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-959-5p

Accession MIMAT0012257
Description Drosophila pseudoobscura dps-miR-959-5p mature miRNA
Sequence 22 - UUAGUACUUGGGUUGAUAAAGA - 43
Evidence experimental
Illumina [1]

Mature dps-miR-959-3p

Accession MIMAT0012258
Description Drosophila pseudoobscura dps-miR-959-3p mature miRNA
Sequence 66 - UUGUCAUCGCGGGUAUUAUGCA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9