miRBase entry: dps-mir-92c

Stem-loop dps-mir-92c


Accession
MI0011604
Description
Drosophila pseudoobscura dps-mir-92c precursor miRNA


Sequence

gcggaagggugcaucgagcugcuuugauuuguAGGCCGUGGUUCUUGCAAAUACGgauucauaacgUAUUGCACUAGCCCCGGUCCAAaaaacaauagcaacgccggcaacagca
(((......)))..((.(((((((((.(((...(((((.((((..(((((.((((.........)))))))))..)))).)))))...))).))).))))..))))((....)).

Structure
gcggaagggugcau  a  --    -   a   guA     U    CU     A    gau 
              cg gc  ugcu uug uuu   GGCCG GGUU  UGCAA UACG   u
              || ||  |||| ||| |||   ||||| ||||  ||||| ||||   c
              gc cg  acga aac aaa   CUGGC CCGA  ACGUU AUgc   a
-----acgacaacg  -  ca    u   a   AAC     C    UC     -    aau 


Annotation confidence Not enough data
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Genome context
3: 8679866-8679980 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from dps-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dps-miR-92c-5p

Accession MIMAT0012243
Description Drosophila pseudoobscura dps-miR-92c-5p mature miRNA
Sequence 33 - AGGCCGUGGUUCUUGCAAAUACG - 55
Evidence experimental
Illumina [1]

Mature dps-miR-92c-3p

Accession MIMAT0012244
Description Drosophila pseudoobscura dps-miR-92c-3p mature miRNA
Sequence 67 - UAUUGCACUAGCCCCGGUCCAA - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20037610
    Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
    "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
    "Nat Genet (2010) 42:6-9