Stem-loop dme-mir-2501

Accession

MI0011590

Description

Drosophila melanogaster dme-mir-2501 precursor miRNA

Literature search

1 open access papers mention dme-mir-2501
(1 sentences)

Sequence

61 reads, 30 reads per million, 23 experiments

GUAAGUUUGGAGUGCCUGGGCUAagaacuuccauucugaaacuuaACUCUUGCAAUCAAACUUUCUUucag
..((((((((..(((..(((.((((...(((......))).)))).)))..))).))))))))........

Structure

------GU        AG   CU   C    aac   ca 
        AAGUUUGG  UGC  GGG UAag   uuc  u
        ||||||||  |||  ||| ||||   |||   
        UUCAAACU  ACG  CUC auuc   aag  u
gacuUUCU        -A   UU   A    --a   uc 

Annotation confidence Not enough data

Genome context

chr3L: 8111107-8111177 [+]

Mature dme-miR-2501-5p

• Accession: MIMAT0012216
• Description: Drosophila melanogaster dme-miR-2501-5p mature miRNA
• Sequence: 1 - GUAAGUUUGGAGUGCCUGGGCUA - 23
• Evidence: experimental ; Illumina [1]

Mature dme-miR-2501-3p

• Accession: MIMAT0012217
• Description: Drosophila melanogaster dme-miR-2501-3p mature miRNA
• Sequence: 46 - ACUCUUGCAAUCAAACUUUCUU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9


2. PubMed ID: 20620959
   MicroRNA biogenesis via splicing and exosome-mediated trimming in Drosophila
   "Flynt AS, Greimann JC, Chung WJ, Lima CD, Lai EC"
   "Mol Cell (2010) 38:900-907