Stem-loop dme-mir-2499

Accession

MI0011588

Description

Drosophila melanogaster dme-mir-2499 precursor miRNA

Literature search

1 open access papers mention dme-mir-2499
(1 sentences)

Sequence

114 reads, 108 reads per million, 19 experiments

uccuugcugugggugugguugCGUGCGUAGACGUCAGCGCAAUGCcuuuguuuggcggcAUGCGGAUGACAUUCACGUCCGUAuccgcacacacau
.......((((.((((((.((((.((((.((.((((.((((.((((..........))))))))..)))).)).)))).)))).)))))).)))).

Structure

uccuugc    g      u    U    A  C    -G    A    uuug 
       ugug gugugg ugCG GCGU GA GUCA  CGCA UGCc    u
       |||| |||||| |||| |||| || ||||  |||| ||||     
       acac cacgcc AUGC UGCA UU CAGU  GCGU Acgg    u
------u    a      u    C    C  A    AG    -    cggu 

Annotation confidence Not enough data

Genome context

chrX: 19557008-19557103 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dme-mir-2499

Mature dme-miR-2499-5p

• Accession: MIMAT0012212
• Description: Drosophila melanogaster dme-miR-2499-5p mature miRNA
• Sequence: 22 - CGUGCGUAGACGUCAGCGCAAUGC - 45
• Evidence: experimental ; Illumina [1]

Mature dme-miR-2499-3p

• Accession: MIMAT0012213
• Description: Drosophila melanogaster dme-miR-2499-3p mature miRNA
• Sequence: 60 - AUGCGGAUGACAUUCACGUCCGUA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20037610
   Evolutionary flux of canonical microRNAs and mirtrons in Drosophila
   "Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC"
   "Nat Genet (2010) 42:6-9