Stem-loop osa-MIR2118j

Accession

MI0011260

Description

Oryza sativa osa-MIR2118j precursor miRNA

Literature search

28 open access papers mention osa-MIR2118j
(157 sentences)

Sequence

12050 reads, 129.0 reads per million, 83 experiments

ggugagccaggaagaggaagagagacucuaagagcaguaGGAAUGGGAACAUGAAGGAAAGccaaauuaagcucuaaccucugguauuggagauuuggucugaugauuUUCCUGAUGCCUCCCAUUCCUAUaguucuuaggugcucguuccucuuacuuucagcuaacacc
(((((((.(((((((((((..(((((.((((((((.((((((((((((.(((..(((((((((((((....((((((((...)))..))))))))))))........)))))).)))..)))))))))))).)))))))))).))).)))))))).)))...)))..))))

Structure

    --   --c   -        ga   -  u        a            -A   GA      --------       uaag     --   u 
ggug  agc   agg aagaggaa  gag ac cuaagagc guaGGAAUGGGA  CAU  AGGAAA        Gccaaau    cucua  acc  
||||  |||   ||| ||||||||  ||| || |||||||| ||||||||||||  |||  ||||||        |||||||    |||||  ||| c
ccac  ucg   uuc uucuccuu  cuc ug gauucuug UAUCCUUACCCU  GUA  UCCUUu        ugguuua    gaggu  ugg  
    aa   acu   a        -g   g  -        a            CC   -G      uaguaguc       ----     ua   u 

Annotation confidence Medium

Genome context

4: 21654594-21654764 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from osa-MIR2118j

Mature osa-miR2118j-5p

• Accession: MIMAT0056122
• Description: Oryza sativa osa-miR2118j-5p mature miRNA
• Sequence: 40 - GGAAUGGGAACAUGAAGGAAAG - 61
• Evidence: experimental ; unknown

Mature osa-miR2118j-3p

• Accession: MIMAT0011749
• Description: Oryza sativa osa-miR2118j-3p mature miRNA
• Sequence: 109 - UUCCUGAUGCCUCCCAUUCCUAU - 131
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440