Stem-loop osa-MIR2118f

Accession

MI0011256

Description

Oryza sativa osa-MIR2118f precursor miRNA

Literature search

28 open access papers mention osa-MIR2118f
(158 sentences)

Sequence

12784 reads, 120.0 reads per million, 92 experiments

gugagccagggaagaggaagaacgagaggguucaauagcagugGGAAUGGGAACAUGGAGGAAAGcaugagcucuaaauuuccuccaaaggagauccugcuuuguguuUUCCUGAUGCCUCCCAUUCCUAUuguucuugggugcuccuuccccuuccuucuuggcuugc
((((((((((((((.(((((.....(((.((((((.((((((((((((((((.(((..((((((((((((((.....(((((((....)))))))...)).)))))))))))).)))..)))))))))))))))).)))))).)))))))).))))))...))))))))

Structure

        ---      a     aacga   g      u                -A   GG            -  ucuaa       c 
gugagcca   gggaag ggaag     gag guucaa agcagugGGAAUGGGA  CAU  AGGAAAGcauga gc     auuuccu c
||||||||   |||||| |||||     ||| |||||| ||||||||||||||||  |||  |||||||||||| ||     |||||||  
cguucggu   uccuuc ccuuc     cuc uggguu uuguUAUCCUUACCCU  GUA  UCCUUuuguguu cg     uagagga a
        ucu      c     -----   g      c                CC   -G            u  --ucc       a 

Annotation confidence High

Genome context

4: 21650514-21650682 [-]

Clustered miRNAs

14 other miRNAs are < 10 kb from osa-MIR2118f

Mature osa-miR2118f-5p

• Accession: MIMAT0056118
• Description: Oryza sativa osa-miR2118f-5p mature miRNA
• Sequence: 44 - GGAAUGGGAACAUGGAGGAAAG - 65
• Evidence: experimental ; unknown

Mature osa-miR2118f-3p

• Accession: MIMAT0011745
• Description: Oryza sativa osa-miR2118f-3p mature miRNA
• Sequence: 109 - UUCCUGAUGCCUCCCAUUCCUAU - 131
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19584097
   Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
   "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
   "Genome Res (2009) 19:1429-1440