Stem-loop osa-MIR2122

Accession

MI0010711

Description

Oryza sativa osa-MIR2122 precursor miRNA

Literature search

2 open access papers mention osa-MIR2122
(4 sentences)

Sequence

77277 reads, 294.0 reads per million, 142 experiments

uuucaaaaauaaccuuuuguucagcgcaaaaucguauagcgcUGAACUUAGACACCUCAGCGCcacgucaacuggcgcugaaugucgugccaccgugaauaggaggcugagucagcgugccaauguacauucagcgucgugcuauuuagcgcugaggugucuaaguuuagugccauauGAUUUGGCGCUGAACAAAAugguaauuuuuuaaa
....((((((.((((((((((((((((.(((((((((.(((((((((((((((((((((((((.......((.((((((((((((((((.(((..(((.(((....)))..)))..))).).))).))))))))))))))........))))))))))))))))))))))))).))))))))).))))))))))))).))).))))))....

Structure

uuuc      a   -             a         a                         -cacguca  u            -   - c   cg   -a   g 
    aaaaau acc uuuuguucagcgc aaaucguau gcgcUGAACUUAGACACCUCAGCGC        ac ggcgcugaaugu cgu g cac  uga  uag a
    |||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||        || |||||||||||| ||| | |||  |||  |||  
    uuuuua ugg AAAACAAGUCGCG UUUAGuaua cgugauuugaaucuguggagucgcg        ug cugcgacuuaca gua c gug  acu  guc g
aaau      a   u             G         c                         auuuaucg  -            u   a c   cg   ga   g 

Annotation confidence Low

Comments

Huang et al. incorrectly named this sequence miR603 in [1].

Genome context

2: 8715222-8715433 [+]

Mature osa-miR2122-5p

• Accession: MIMAT0011182
• Description: Oryza sativa osa-miR2122-5p mature miRNA
• Sequence: 43 - UGAACUUAGACACCUCAGCGC - 63
• Evidence: experimental ; cloned [1]

Mature osa-miR2122-3p

• Accession: MIMAT0056112
• Description: Oryza sativa osa-miR2122-3p mature miRNA
• Sequence: 179 - GAUUUGGCGCUGAACAAAA - 197
• Evidence: experimental ; unknown

References

1. PubMed ID: 19081140
   Heavy metal-regulated new microRNAs from rice
   "Huang SQ, Peng J, Qiu CX, Yang ZM"
   "J Inorg Biochem (2009) 103:282-287