miRBase entry: osa-MIR2121b

Stem-loop osa-MIR2121b


Accession
MI0010710
Description
Oryza sativa osa-MIR2121b precursor miRNA


Sequence

179787 reads, 562.0 reads per million, 142 experiments
gcgcuaauaagucguuucAUUUUGCGUGCGUGAGAGUUUUCAagaaccuccugucuaaccaacccaaaauuggguuggccacguauaguccaaggaugugugugugagaugcauucauuuaugugcguugggaacucauucccuccgcacggAAAACGGAGCGGUCCAUUAGCGCGu
((((((((...(((((((.((((.((((((.(((.((((....)))))))........((((((((....)))))))).(((((((((((....))).)))))))).(((((((........)))))))(((((....)))))..)))))).)))).)))))))...))))))))..

Structure
--        aag       A    G      ----------------------------------------------------------------------------------------------U   A    U 
  gcgcuaau   ucguuuc UUUU CGUGCG                                                                                               GAG GUUU C
  ||||||||   ||||||| |||| ||||||                                                                                               ||| ||||  
  CGCGAUUA   GGCGAGG AAAA gcacgc                                                                                               cuc caag A
uG        CCU       C    g      cucccuuacucaaggguugcguguauuuacuuacguagaguguguguguaggaaccugauaugcaccgguuggguuaaaacccaaccaaucuguc   -    a 


Annotation confidence Low
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Comments
Huang et al. incorrectly named this sequence miR602 in [1].

Genome context
4: 16882244-16882420 [+]

Database links

Mature osa-miR2121b-5p

Accession MIMAT0056111
Description Oryza sativa osa-miR2121b-5p mature miRNA
Sequence 19 - AUUUUGCGUGCGUGAGAGUUUUCA - 42
Evidence experimental
unknown

Mature osa-miR2121b-3p

Accession MIMAT0011181
Description Oryza sativa osa-miR2121b-3p mature miRNA
Sequence 153 - AAAACGGAGCGGUCCAUUAGCGCG - 176
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 19081140
    Heavy metal-regulated new microRNAs from rice
    "Huang SQ, Peng J, Qiu CX, Yang ZM"
    "J Inorg Biochem (2009) 103:282-287