Stem-loop sma-mir-125a

Accession

MI0010676

Description

Schistosoma mansoni sma-mir-125a precursor miRNA

Gene family

MIPF0000733; mir-125_2

Literature search

3 open access papers mention sma-mir-125a
(7 sentences)

Sequence

gcUCCCUGAGACCCUUUGAUUGCCuuguuauuacaauacuguacauaacaugaucaggCAGCCAAAGUGACUCAGGUaugca
((..((((((.(.(((((.((((((((((((((((....)))).)))))).....)))))).))))).).))))))...)).

Structure

-  -UC      A C     A      -----      -    a 
 gc   CCUGAG C CUUUG UUGCCu     uguuau uaca u
 ||   |||||| | ||||| ||||||     |||||| ||||  
 cg   GGACUC G GAAAC GACgga     acaaua augu a
a  uaU      A U     C      cuagu      c    c 

Annotation confidence Not enough data

Genome context

Chr_1: 38691263-38691344 [-]

Mature sma-miR-125a-5p

• Accession: MIMAT0010183
• Description: Schistosoma mansoni sma-miR-125a-5p mature miRNA
• Sequence: 3 - UCCCUGAGACCCUUUGAUUGCC - 24
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-125a-3p

• Accession: MIMAT0032105
• Description: Schistosoma mansoni sma-miR-125a-3p mature miRNA
• Sequence: 59 - CAGCCAAAGUGACUCAGGU - 77
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402