Stem-loop sma-mir-71a

Accession

MI0010674

Description

Schistosoma mansoni sma-mir-71a precursor miRNA

Gene family

MIPF0000278; mir-71

Literature search

8 open access papers mention sma-mir-71a
(30 sentences)

Sequence

ugugauacuagugcugUGAAAGACGAUGGUAGUGAGAugccgauugcaUCUCGCUUCCCCGCCUUUCCCGguaagaaucacg
.(((((.((..(((((.(((((.((..((.((((((((((.....)))))))))).)).)).))))).))))))).))))).

Structure

u     a  ag     U     A  AU  U          c 
 gugau cu  ugcug GAAAG CG  GG AGUGAGAugc g
 ||||| ||  ||||| ||||| ||  || |||||||||| a
 cacua ga  augGC CUUUC GC  CC UCGCUCUacg u
g     a  --     C     C  -C  U          u 

Annotation confidence Not enough data

Genome context

Chr_W: 22875654-22875735 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from sma-mir-71a

Mature sma-miR-71a-5p

• Accession: MIMAT0010181
• Description: Schistosoma mansoni sma-miR-71a-5p mature miRNA
• Sequence: 17 - UGAAAGACGAUGGUAGUGAGA - 37
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-miR-71a-3p

• Accession: MIMAT0032103
• Description: Schistosoma mansoni sma-miR-71a-3p mature miRNA
• Sequence: 49 - UCUCGCUUCCCCGCCUUUCCCG - 70
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402