Stem-loop sma-let-7

Accession

MI0010673

Description

Schistosoma mansoni sma-let-7 precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

8 open access papers mention sma-let-7
(17 sentences)

Sequence

ugGGAGGUAGUUCGUUGUGUGGUuugcuugucaaaaugauuaaaagacCAUACAACCGACUGGCUUUCCCAUu
((((((.(((((.((((((((((((....((((...))))....)))))))))))).))))).)..)))))..

Structure

--     -- G     C            gcuu    a 
  ugGGA  G UAGUU GUUGUGUGGUuu    guca  
  |||||  | ||||| ||||||||||||    |||| a
  ACCCU  C GUCAG CAACAUACcaga    uagu  
uU     UU G     C            aaau    a 

Annotation confidence Not enough data

Genome context

Chr_7: 5118791-5118863 [+]

Mature sma-let-7-5p

• Accession: MIMAT0010180
• Description: Schistosoma mansoni sma-let-7-5p mature miRNA
• Sequence: 3 - GGAGGUAGUUCGUUGUGUGGU - 23
• Evidence: experimental ; Illumina [2], SOLiD [2]

Mature sma-let-7-3p

• Accession: MIMAT0032102
• Description: Schistosoma mansoni sma-let-7-3p mature miRNA
• Sequence: 49 - CAUACAACCGACUGGCUUUCCCAU - 72
• Evidence: experimental ; Illumina [2], SOLiD [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402