Stem-loop osa-MIR2104

Accession

MI0010565

Description

Oryza sativa osa-MIR2104 precursor miRNA

Literature search

1 open access papers mention osa-MIR2104
(3 sentences)

Sequence

744 reads, 5.0 reads per million, 38 experiments

acgggcgcucacgguggcuucgacccucgucucggccgcgugcGGUAGUGCGGGAGGCAUGCCGUGuguaccgGCGGCGAGGGGAUGCGAGCGUGagugccucgg
.((((((((((((.(.((.((..((((((((((((..((((((((((.(((.....))))))))))))).)))).)))))))))).)).).)))))))))).)).

Structure

a  -          g g  u  ga        -    cc          G   G 
 cg ggcgcucacg u gc uc  cccucguc ucgg  gcgugcGGUA UGC G
 || |||||||||| | || ||  |||||||| ||||  |||||||||| ||| G
 gc ccgugaGUGC A CG AG  GGGAGCGG Ggcc  uguGUGCCGU ACG A
g  u          G G  U  --        C    -a          -   G 

Annotation confidence Low

Genome context

11: 13372008-13372112 [-]

Mature osa-miR2104-5p

• Accession: MIMAT0056106
• Description: Oryza sativa osa-miR2104-5p mature miRNA
• Sequence: 44 - GGUAGUGCGGGAGGCAUGCCGUG - 66
• Evidence: experimental ; unknown

Mature osa-miR2104-3p

• Accession: MIMAT0010072
• Description: Oryza sativa osa-miR2104-3p mature miRNA
• Sequence: 74 - GCGGCGAGGGGAUGCGAGCGUG - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930