Stem-loop osa-MIR2101

Accession

MI0010561

Description

Oryza sativa osa-MIR2101 precursor miRNA

Literature search

2 open access papers mention osa-MIR2101
(2 sentences)

Sequence

103277 reads, 737.0 reads per million, 92 experiments

ucuuaucucacauguuuacaAGUUAAAAUGUGGAGCAGAGGGUAUacaacccaaacaaguuuggcacucugAACGAUUUAACUCAAGUGAGCAUUgugcgaggccau
.....((.(((((((((((.(((((((.(((((((((((((((.....)))).......))))...))))..))).)))))))...))))))).)))).))......

Structure

-ucuua  u    -       --a       A   --    ---    -------    A 
      uc caca uguuuac   AGUUAAA UGU  GGAG   CAGA       GGGU U
      || |||| |||||||   ||||||| |||  ||||   ||||       |||| a
      ag gugU ACGAGUG   UCAAUUU GCA  ucuc   guuu       ccca c
uaccgg  c    U       AAC       A   Ag    acg    gaacaaa    a 

Annotation confidence Low

Genome context

12: 17986691-17986797 [+]

Mature osa-miR2101-5p

• Accession: MIMAT0010066
• Description: Oryza sativa osa-miR2101-5p mature miRNA
• Sequence: 21 - AGUUAAAAUGUGGAGCAGAGGGUAU - 45
• Evidence: experimental ; Illumina [1]

Mature osa-miR2101-3p

• Accession: MIMAT0010067
• Description: Oryza sativa osa-miR2101-3p mature miRNA
• Sequence: 72 - AACGAUUUAACUCAAGUGAGCAUU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930