Stem-loop osa-MIR2100

Accession

MI0010560

Description

Oryza sativa osa-MIR2100 precursor miRNA

Sequence

8950 reads, 43.0 reads per million, 129 experiments

uucccuucucucaaguugccaaacaagccaAGUUGCCAAACAAGCCGUaggguggguggggaagaucggaagaagcggcacucgaucgcuauuuuuuuucuuuuuaccgaucucuuucuguaaccgcuGUUUAGGCGGAGUGGGGAGUGGGAa
.((((..(((((...((((((((((.((...(((((...((..(((....)))..))((((((((((((((((((.(((........))).........)))))).))))))).)))))))))).))))))).)))))....))))).)))).

Structure

u    uu     -aag     -     a  caA     -----------------------------------------------------------CAA  AA   G 
 uccc  cucuc    uugcc aaaca gc   GUUGC                                                              AC  GCC U
 ||||  |||||    ||||| ||||| ||   |||||                                                              ||  |||  
 AGGG  GAGGG    GGCGG UUUGu cg   caaug                                                              ug  ugg a
a    -U     GUGA     A     -  --c     ucuuucucuagccauuuuucuuuuuuuuaucgcuagcucacggcgaagaaggcuagaagggg  gg   g 

Annotation confidence Low

Genome context

11: 16194999-16195151 [-]

Mature osa-miR2100-5p

• Accession: MIMAT0010064
• Description: Oryza sativa osa-miR2100-5p mature miRNA
• Sequence: 31 - AGUUGCCAAACAAGCCGU - 48
• Evidence: experimental ; Illumina [1]

Mature osa-miR2100-3p

• Accession: MIMAT0010065
• Description: Oryza sativa osa-miR2100-3p mature miRNA
• Sequence: 129 - GUUUAGGCGGAGUGGGGAGUGGGA - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930