miRBase entry: osa-MIR2097

Stem-loop osa-MIR2097


Accession
MI0010557
Description
Oryza sativa osa-MIR2097 precursor miRNA


Sequence

936 reads, 4.0 reads per million, 104 experiments
guggggaagagaugggacgggcagggaAGGAAGUAGAUGGAUAGAGUUUGGggauaggagggaaggggauagauuugguuguuuuucggaaaaaaaaaaaccuuguguuuuucauguuuacagugcugccccuaagagcagaauuuucucuucuucguGUCGCAUUUCUUUAAAAGC
.....(((((((((.((((.(.((((((((((((...((.......(((((((.(((.(..(((.(.((.((((..((((.(((((......))))).))))....)))).)).).)))....).))).)))))))..))..))))))).)))))).)))).)))))))))......

Structure
-guggg         g    g c     -       AGA  GAUAGAG       a   g --gg   g g  u    --uu    g     cg 
      gaagagaug gacg g aggga AGGAAGU   UG       UUUGGgg uag a    gaa g ga agau    gguu uuuuu  g
      ||||||||| |||| | ||||| |||||||   ||       ||||||| ||| |    ||| | || ||||    |||| |||||   
      UUUCUUUAC CUGu c uucuu ucuuuua   ac       gaauccc guc u    uuu u cu uuug    ccaa aaaaa  a
CGAAAA         G    g -     c       -ag  -----ga       c   g gaca   g a  u    uguu    a     aa 


Annotation confidence Low
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Genome context
1: 9055603-9055779 [+]

Database links

Mature osa-miR2097-5p

Accession MIMAT0010058
Description Oryza sativa osa-miR2097-5p mature miRNA
Sequence 28 - AGGAAGUAGAUGGAUAGAGUUUGG - 51
Evidence experimental
Illumina [1]
Database links

Mature osa-miR2097-3p

Accession MIMAT0010059
Description Oryza sativa osa-miR2097-3p mature miRNA
Sequence 159 - GUCGCAUUUCUUUAAAAGC - 177
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19103661
    Characterization and expression profiles of miRNAs in rice seeds
    "Xue LJ, Zhang JJ, Xue HW"
    "Nucleic Acids Res (2009) 37:916-930