miRBase entry: bta-mir-16a

Stem-loop bta-mir-16a


Accession
MI0009753
Description
Bos taurus bta-mir-16a precursor miRNA mir-15
Gene
family?
RF00455; mir-15

Literature search
25 open access papers mention bta-mir-16a
(61 sentences)

Sequence

42557 reads, 574 reads per million, 74 experiments
gucagcagugccuUAGCAGCACGUAAAUAUUGGUGuuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguuggc
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure
      ag   c          -  A        U u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
cgguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 


Annotation confidence High
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Genome context
chr12: 19660386-19660474 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-16a

Accession MIMAT0009242
Description Bos taurus bta-miR-16a mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGUG - 35
Evidence experimental
cloned [2]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125