Stem-loop osa-MIR1320

Accession

MI0009717

Description

Oryza sativa osa-MIR1320 precursor miRNA

Literature search

10 open access papers mention osa-MIR1320
(17 sentences)

Sequence

84 reads, 58 reads per million, 2 experiments

uuaggccuacuuUGGAACGGAGGAAUUUUAUAGgauuuuugcgggaauuuuaacagauuccUGUAAAAUUCAUUCGUUCCAAuguagcccuauuag
.((((.((((.((((((((((.(((((((((((((..((((............)))).))))))))))))).)))))))))).)))).))))....

Structure

---u    c    u          G             uu    cggga 
    uagg cuac uUGGAACGGA GAAUUUUAUAGga  uuug     a
    |||| |||| |||||||||| |||||||||||||  ||||      
    aucc gaug AACCUUGCUU CUUAAAAUGUccu  agac     u
gauu    c    u          A             -u    aauuu 

Annotation confidence Low

Genome context

Chr6: 5073507-5073602 [-]

Mature osa-miR1320-5p

• Accession: MIMAT0009137
• Description: Oryza sativa osa-miR1320-5p mature miRNA
• Sequence: 13 - UGGAACGGAGGAAUUUUAUAG - 33
• Evidence: experimental ; 454 [1], Illumina [2]

Mature osa-miR1320-3p

• Accession: MIMAT0015286
• Description: Oryza sativa osa-miR1320-3p mature miRNA
• Sequence: 62 - UGUAAAAUUCAUUCGUUCCAA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584