Stem-loop osa-MIR1864

Accession

MI0008265

Description

Oryza sativa osa-MIR1864 precursor miRNA

Literature search

2 open access papers mention osa-MIR1864
(2 sentences)

Sequence

29742 reads, 103.0 reads per million, 142 experiments

acuacacAUUGACCAUCGCGUUACUACGCCauucuugagagacgagaauugaaaagaggugggcguggggggagguagcaggcggguuugaccggugggagggggcuuugaccguucuuugaccgaagugggagguggguuuugggcccuagggagggggagguggguuggcccaugagagaccuccccccacacccaccccuuuuugguuugugucgcaggaacaUUGUAGUAACGUGAUGGUCAAUGUguagua
((((((((((((((((((((((((((((...((((((.((.((((..(((((((((.((((((.((((((((((((..(..(.(((((...(((.(.....(((((((.((((..(((((.((....)).)))))..))))..)))))))...........).)))...))))).)..)..)))))))))))).)))))).))))))))))))).)).))))))...)))))))))))))))))))))))))))).

Structure

-                            CCa      a  g    ga         a      c            ag ag c     uga   g ------gggag       -u    gu     g  c 
 acuacacAUUGACCAUCGCGUUACUACG   uucuug ga acga  auugaaaag gguggg guggggggaggu  c  g ggguu   ccg u           ggggcuu  gacc  ucuuu ac g
 ||||||||||||||||||||||||||||   |||||| || ||||  ||||||||| |||||| ||||||||||||  |  | |||||   ||| |           |||||||  ||||  ||||| ||  
 ugaugUGUAACUGGUAGUGCAAUGAUGU   aaggac cu uguu  ugguuuuuc ccaccc caccccccucca  g  u cccgg   ggu g           ucccggg  uugg  ggagg ug a
a                            Uac      g  g    --         c      a            ga ag a     uug   g agggggaggga       uu    gu     g  a 

Annotation confidence Medium

Genome context

2: 14949073-14949328 [-]

Mature osa-miR1864-5p

• Accession: MIMAT0056070
• Description: Oryza sativa osa-miR1864-5p mature miRNA
• Sequence: 8 - AUUGACCAUCGCGUUACUACGCC - 30
• Evidence: experimental ; unknown

Mature osa-miR1864-3p

• Accession: MIMAT0007814
• Description: Oryza sativa osa-miR1864-3p mature miRNA
• Sequence: 227 - UUGUAGUAACGUGAUGGUCAAUGU - 250
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465