Stem-loop osa-MIR1861b

Accession

MI0008248

Description

Oryza sativa osa-MIR1861b precursor miRNA

Literature search

10 open access papers mention osa-MIR1861b
(56 sentences)

Sequence

219333 reads, 990.0 reads per million, 135 experiments

uugcauauucuuaggccCGAUCUUGAGGCAGGAACUGAGuaguucgugaacucgcucuauguuguucguucacccacuauuCGGUUCCUGUCCCAAGAUCGAGucugugaauauacaa
.((.((((((.(((((.((((((((.(((((((((((((((((..((((((..((........))..))))))..))))))))))))))))).)))))))).))))).)))))).)).

Structure

u  c      u     c        A                 uc      uc  ucu 
 ug auauuc uaggc CGAUCUUG GGCAGGAACUGAGuagu  gugaac  gc   a
 || |||||| ||||| |||||||| |||||||||||||||||  ||||||  ||    
 ac uauaag gucuG GCUAGAAC CUGUCCUUGGCuuauca  cacuug  ug   u
a  a      u     A        C                 cc      cu  uug 

Annotation confidence High

Genome context

2: 20715962-20716079 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1861b

Mature osa-miR1861b-5p

• Accession: MIMAT0007797
• Description: Oryza sativa osa-miR1861b-5p mature miRNA
• Sequence: 18 - CGAUCUUGAGGCAGGAACUGAG - 39
• Evidence: experimental ; 454 [1]

Mature osa-miR1861b-3p

• Accession: MIMAT0056053
• Description: Oryza sativa osa-miR1861b-3p mature miRNA
• Sequence: 82 - CGGUUCCUGUCCCAAGAUCGAG - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465