miRBase entry: cel-mir-1019

Stem-loop cel-mir-1019


Accession
MI0005880
Description
Caenorhabditis elegans cel-mir-1019 precursor miRNA


Sequence

58 reads, 6 reads per million, 11 experiments
GUGAGCAUUGUUCGAGUUUCAUUUUuaauaaaauuuauuuaaaaaCUGUAAUUCCACAUUGCUUUCCAG
(.(((((.(((..(((((.(((((((((..........))))))).)).))))).))).))))).)...

Structure
--- U     U   UC     U  -       uaaa 
   G GAGCA UGU  GAGUU CA UUUUuaa    a
   | ||||| |||  ||||| || |||||||     
   C UUCGU ACA  CUUAA GU aaaaauu    u
GAC U     U   -C     U  C       uauu 


Annotation confidence Not enough data
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Comments
The 5' mature sequence was erroneously named mir-803 in [2].

Genome context
chrI: 9361597-9361665 [+]

Database links

Mature cel-miR-1019-5p

Accession MIMAT0005822
Description Caenorhabditis elegans cel-miR-1019-5p mature miRNA
Sequence 1 - GUGAGCAUUGUUCGAGUUUCAUUUU - 25
Evidence experimental
454 [1]
Database links

Mature cel-miR-1019-3p

Accession MIMAT0005032
Description Caenorhabditis elegans cel-miR-1019-3p mature miRNA
Sequence 46 - CUGUAAUUCCACAUUGCUUUCCAG - 69
Evidence experimental
454 [1]

References

  1. PubMed ID: 17589500
    Intronic microRNA precursors that bypass Drosha processing
    "Ruby JG, Jan CH, Bartel DP"
    "Nature (2007) 448:83-86

  2. PubMed ID: 18042455
    Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
    "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
    "Mol Cell (2007) 28:598-613