Stem-loop mtr-MIR319b

Accession

MI0005596

Description

Medicago truncatula mtr-MIR319b precursor miRNA

Literature search

6 open access papers mention mtr-MIR319b
(29 sentences)

Sequence

17536039 reads, 105767.0 reads per million, 111 experiments

uaagAGAGCUUUCUUUAGUCCACUCaugggugacaauaagauuucaauuagcugcugacucauucauccaaauguugaguaaaauauauagaaacauauacucaucaaaugagugaaugaugcgggagacaaauugaaucuuaaguuuccuauacUUGGACUGAAGGGAGCUCCCUuuuc
.(((.(((((((((((((((((...(((((.(((..(((((((.(((((.(((.(((..((((((((.((..((.((((((.................)))))).))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).)))...

Structure

--u   A                 CUC     u   aa       u     a -  g   ac        c  aa  u      aaauaua 
   aag GAGCUUUCUUUAGUCCA   auggg gac  uaagauu caauu g cu cug  ucauucau ca  ug ugagua       u
   ||| |||||||||||||||||   ||||| |||  ||||||| ||||| | || |||  |||||||| ||  || ||||||       a
   uUC CUCGAGGGAAGUCAGGU   uaucc uug  auucuaa guuaa c ga ggc  aguaagug gu  ac acucau       g
cuu   C                 Uca     u   -a       -     a a  g   gu        a  aa  u      auacaaa 

Annotation confidence High

Genome context

chr5: 2188491-2188670 [+]

Mature mtr-miR319b-5p

• Accession: MIMAT0026727
• Description: Medicago truncatula mtr-miR319b-5p mature miRNA
• Sequence: 5 - AGAGCUUUCUUUAGUCCACUC - 25
• Evidence: experimental ; Illumina [3]

Mature mtr-miR319b-3p

• Accession: MIMAT0011082
• Description: Medicago truncatula mtr-miR319b-3p mature miRNA
• Sequence: 156 - UUGGACUGAAGGGAGCUCCCU - 176
• Evidence: experimental ; 454 [2], Illumina [3]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None:


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105