Stem-loop mtr-MIR166b

Accession

MI0005575

Description

Medicago truncatula mtr-MIR166b precursor miRNA

Literature search

11 open access papers mention mtr-MIR166b
(49 sentences)

Sequence

15817155 reads, 98556.0 reads per million, 111 experiments

guugaugGGAAUGUUGUUUGGCUCGAGguaauaacuaacucaauuucuuugucuuugaaagcuuuucuuuguuucacucuuuuugauucuuagaaaguugaaacuaagugagcuuuaaagguuugauuuugaugugugauuaucUCGGACCAGGCUUCAUUCCUAccaac
((((.((((((((..((((((.((((((((((.((..((((((..((....((((((((.((((..(((.((((((..((((((((...)))))))).)))))).))).))))))))))))...))..)))).)))).)))))))))).))))))..)))))))).))))

Structure

    a        UU      C          a  ua  -    uu  uuug        a    uu   u      cu        u 
guug ugGGAAUG  GUUUGG UCGAGguaau ac  ac ucaa  uc    ucuuugaa gcuu  cuu guuuca  cuuuuuga  
|||| ||||||||  |||||| |||||||||| ||  || ||||  ||    |||||||| ||||  ||| ||||||  |||||||| u
caac AUCCUUAC  CGGACC GGCUcuauua ug  ug aguu  ag    ggaaauuu cgag  gaa caaagu  gaaagauu  
    c        UU      A          g  --  u    uu  -uuu        -    -u   u      -u        c 

Annotation confidence High

Genome context

chr2: 950526-950695 [-]

Mature mtr-miR166b-5p

• Accession: MIMAT0054762
• Description: Medicago truncatula mtr-miR166b-5p mature miRNA
• Sequence: 8 - GGAAUGUUGUUUGGCUCGAG - 27
• Evidence: experimental ; unknown

Mature mtr-miR166b-3p

• Accession: MIMAT0011061
• Description: Medicago truncatula mtr-miR166b-3p mature miRNA
• Sequence: 145 - UCGGACCAGGCUUCAUUCCUA - 165
• Evidence: experimental ; Illumina [2]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105