Stem-loop hsa-mir-885

Accession

MI0005560

Symbol

HGNC: MIR885

Description

Homo sapiens hsa-mir-885 precursor miRNA mir-885

Gene
family

RF01015; mir-885

Literature search

38 open access papers mention hsa-mir-885
(236 sentences)

Sequence

1421 reads, 59 reads per million, 69 experiments

ccgcacucucUCCAUUACACUACCCUGCCUCUucuccaugagAGGCAGCGGGGUGUAGUGGAUAgagcacgggu
(((..((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))..)))..

Structure

--   ca    c           A  -         cu 
  ccg  cucu UCCAUUACACU CC CUGCCUCUu  c
  |||  |||| ||||||||||| || |||||||||   
  ggc  gagA AGGUGAUGUGG GG GACGGAgag  c
ug   ac    U           -  C         ua 

Annotation confidence High

Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was later confirmed by cloning [2].

Genome context

chr3: 10394489-10394562 [-]

Disease association

hsa-mir-885 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-885-5p

• Accession: MIMAT0004947
• Description: Homo sapiens hsa-miR-885-5p mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCU - 32
• Evidence: experimental ; cloned [2]

Mature hsa-miR-885-3p

• Accession: MIMAT0004948
• Description: Homo sapiens hsa-miR-885-3p mature miRNA
• Sequence: 43 - AGGCAGCGGGGUGUAGUGGAUA - 64
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298