Stem-loop bta-mir-16b

Accession

MI0004739

Description

Bos taurus bta-mir-16b precursor miRNA mir-15

Gene
family

RF00455; mir-15

Literature search

39 open access papers mention bta-mir-16b
(94 sentences)

Sequence

5532979 reads, 2091.0 reads per million, 321 experiments

cauacuuguuccgcugUAGCAGCACGUAAAUAUUGGCGUaguaaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUAgcgugacaggga
....((((((.(((((.(((((((((..((((((((.((((((.......))))..)).))))))))..))))))))).))))).))))))..

Structure

caua      c     U         UA        C  --    aa 
    cuuguu cgcug AGCAGCACG  AAUAUUGG GU  agua  a
    |||||| ||||| |||||||||  |||||||| ||  ||||  u
    ggacag gcgAU UCGUCGUGU  UUAUAACC ca  uuau  a
--ag      u     U         UA        A  aa    aa 

Annotation confidence High

Genome context

1: 107073622-107073714 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-16b

Mature bta-miR-16b-5p

• Accession: MIMAT0003525
• Description: Bos taurus bta-miR-16b-5p mature miRNA
• Sequence: 17 - UAGCAGCACGUAAAUAUUGGCGU - 39
• Evidence: experimental ; cloned [1-3]

Mature bta-miR-16b-3p

• Accession: MIMAT0050777
• Description: Bos taurus bta-miR-16b-3p mature miRNA
• Sequence: 59 - ACCAAUAUUAUUGUGCUGCUUUA - 81
• Evidence: experimental ; cloned [1-3]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343