Stem-loop hsa-mir-320c-1

Accession

MI0003778

Symbol

HGNC: MIR320C1

Description

Homo sapiens hsa-mir-320c-1 precursor miRNA

Literature search

145 open access papers mention hsa-mir-320c-1
(606 sentences)

Sequence

657947 reads, 2007 reads per million, 136 experiments

aaaaaugaggccuucucuucccaguucuucccagagucaggAAAAGCUGGGUUGAGAGGGUagaaaaaaaau
.........((((((((..(((((((.((((........)))).)))))))..))))))))...........

Structure

--aaaaaugag        uu       c    cag 
           gccuucuc  cccaguu uucc   a
           ||||||||  ||||||| ||||    
           UGGGAGAG  GGGUCGA AAgg   g
uaaaaaaaaga        UU       A    acu 

Annotation confidence Not enough data

Comments

This sequence was identified as a candidate by RAKE analysis [1], and later confirmed by Solexa sequencing [2].

Genome context

chr18: 21683518-21683589 [+]

Disease association

hsa-mir-320c-1 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-320c

• Accession: MIMAT0005793
• Description: Homo sapiens hsa-miR-320c mature miRNA
• Sequence: 42 - AAAAGCUGGGUUGAGAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298


2. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415