Stem-loop ssc-mir-325

Accession

MI0002444

Description

Sus scrofa ssc-mir-325 precursor miRNA

Literature search

8 open access papers mention ssc-mir-325
(13 sentences)

Sequence

10718 reads, 27.0 reads per million, 114 experiments

agugcuugguuCCUAGUAGGUGUUCAGUAAGUGUuugugacauaauucgUUUAUUGAGCACCUCCUAUCAAucaagcacugugcuagguucugg
(((((((((((..(((.((((((((((((((((..(........)..)))))))))))))))).)))..)))))))))))..............

Structure

--------------           CC   U                Uu gug 
              agugcuugguu  UAG AGGUGUUCAGUAAGUG  u   a
              |||||||||||  ||| ||||||||||||||||  |    
              ucacgaacuAA  AUC UCCACGAGUUAUUUgc  a   c
ggucuuggaucgug           CU   C                uu aua 

Annotation confidence High

Genome context

chrX: 69436727-69436820 [+]

Mature ssc-miR-325-5p

• Accession: MIMAT0002150
• Description: Sus scrofa ssc-miR-325-5p mature miRNA
• Sequence: 12 - CCUAGUAGGUGUUCAGUAAGUGU - 34
• Evidence: not_experimental

Mature ssc-miR-325-3p

• Accession: MIMAT0052572
• Description: Sus scrofa ssc-miR-325-3p mature miRNA
• Sequence: 50 - UUUAUUGAGCACCUCCUAUCAA - 71
• Evidence: not_experimental

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70