Stem-loop ssc-mir-32

Accession

MI0002443

Description

Sus scrofa ssc-mir-32 precursor miRNA

Literature search

8 open access papers mention ssc-mir-32
(11 sentences)

Sequence

130134 reads, 159.0 reads per million, 204 experiments

ggagaUAUUGCACAUUACUAAGUUGCauguugucacggccucagugCAAUUUAGUGUGUGUGAUAUUuuc
(((((((((((((((.((((((((((((((((...))))....)))))))))))))))))))))))))))

Structure

               U            ----    u 
ggagaUAUUGCACAU ACUAAGUUGCau    guug  
||||||||||||||| ||||||||||||    |||| c
cuuUUAUAGUGUGUG UGAUUUAACgug    cggc  
               -            acuc    a 

Annotation confidence High

Genome context

chr1: 280645137-280645206 [-]

Mature ssc-miR-32-5p

• Accession: MIMAT0002149
• Description: Sus scrofa ssc-miR-32-5p mature miRNA
• Sequence: 6 - UAUUGCACAUUACUAAGUUGC - 26
• Evidence: not_experimental

Mature ssc-miR-32-3p

• Accession: MIMAT0052571
• Description: Sus scrofa ssc-miR-32-3p mature miRNA
• Sequence: 47 - CAAUUUAGUGUGUGUGAUAUU - 67
• Evidence: not_experimental

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70