Stem-loop ssc-mir-27a

Accession

MI0002442

Description

Sus scrofa ssc-mir-27a precursor miRNA

Literature search

25 open access papers mention ssc-mir-27a
(73 sentences)

Sequence

991 reads, 237 reads per million, 13 experiments

uggccuggggagcagggcuuagcugcuugugagcagguccacagcaagucgugUUCACAGUGGCUAAGUUCCGCccccugga
...((.((((.((.(((((((((((((.(((((((.(.(........).).)))))))))))))))))))).)))))).)).

Structure

ugg  u    a  a             u       g u cac 
   cc gggg gc gggcuuagcugcu gugagca g c   a
   || |||| || ||||||||||||| ||||||| | |    
   gg cccc CG CUUGAAUCGGUGA CACUUgu c g   g
--a  u    -  C             -       g u aac 

Annotation confidence Not enough data

Genome context

chr2: 65582015-65582096 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-mir-27a

Mature ssc-miR-27a

• Accession: MIMAT0002148
• Description: Sus scrofa ssc-miR-27a mature miRNA
• Sequence: 54 - UUCACAGUGGCUAAGUUCCGC - 74
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100