miRBase entry: ssc-mir-181c

Stem-loop ssc-mir-181c

Sus scrofa ssc-mir-181c precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
24 open access papers mention ssc-mir-181c
(66 sentences)


131 reads, 119 reads per million, 11 experiments

caa      g    AA        CU       A     ggca 
   ggguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
   |||||| ||||  ||||||||  ||||||| |||||    c
   uccgga cccc  gugaguug  cagcuac caaac    u
agg      g    ag        -c       -     ggac 

Annotation confidence Not enough data
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Genome context
chr2: 65553664-65553750 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-181c
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ssc-miR-181c

Accession MIMAT0002144
Description Sus scrofa ssc-miR-181c mature miRNA
Evidence experimental
Illumina [2-4]


  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100