miRBase entry: ssc-mir-24-1

Stem-loop ssc-mir-24-1


Accession
MI0002428
Description
Sus scrofa ssc-mir-24-1 precursor miRNA

Literature search
33 open access papers mention ssc-mir-24-1
(81 sentences)

Sequence

4076 reads, 1148 reads per million, 11 experiments
cucugccucccGUGCCUACUGAGCUGAAACACAGUugauuugugcagacUGGCUCAGUUCAGCAGGAACAGg
........((.((.(((.(((((((((....(((((..........)))))..))))))))).))).)).))

Structure
cucugccu  c  G   A         AACA     gauu 
        cc GU CCU CUGAGCUGA    CAGUu    u
        || || ||| |||||||||    |||||     
        gG CA GGA GACUUGACU    GUcag    g
--------  A  A   C         --CG     acgu 


Annotation confidence High
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Genome context
chr2: 65582174-65582245 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-24-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-24-1-5p

Accession MIMAT0015210
Description Sus scrofa ssc-miR-24-1-5p mature miRNA
Sequence 12 - GUGCCUACUGAGCUGAAACACAGU - 35
Evidence experimental
Illumina [3,5-6]

Mature ssc-miR-24-3p

Accession MIMAT0002134
Description Sus scrofa ssc-miR-24-3p mature miRNA
Sequence 50 - UGGCUCAGUUCAGCAGGAACAG - 71
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  5. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  6. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100