miRBase entry: ssc-mir-24-1

Stem-loop ssc-mir-24-1

Sus scrofa ssc-mir-24-1 precursor miRNA
Gene family
MIPF0000041; mir-24

Literature search
33 open access papers mention ssc-mir-24-1
(81 sentences)


4076 reads, 1148 reads per million, 11 experiments

cucugccu  c  G   A         AACA     gauu 
        cc GU CCU CUGAGCUGA    CAGUu    u
        || || ||| |||||||||    |||||     
        gG CA GGA GACUUGACU    GUcag    g
--------  A  A   C         --CG     acgu 

Annotation confidence High
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Genome context
chr2: 65582174-65582245 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-24-1
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ssc-miR-24-1-5p

Accession MIMAT0015210
Description Sus scrofa ssc-miR-24-1-5p mature miRNA
Evidence experimental
Illumina [3,5-6]

Mature ssc-miR-24-3p

Accession MIMAT0002134
Description Sus scrofa ssc-miR-24-3p mature miRNA
Evidence experimental
Illumina [1,3-4], cloned [2]


  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  3. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  4. PubMed ID: 18548309
    Identification and characterization of new microRNAs from pig
    "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
    "Mamm Genome (2008) 19:570-580

  5. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  6. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100