miRBase entry: ssc-mir-216-1

Stem-loop ssc-mir-216-1

Sus scrofa ssc-mir-216-1 precursor miRNA
Gene family
MIPF0000054; mir-216

Literature search
4 open access papers mention ssc-mir-216-1
(6 sentences)


1 reads, 2 reads per million, 1 experiments

----------gaug   g  ag     u         CU   A      --A   -  u 
              gcu ug  uuggc UAAUCUCAG  GGC ACUGUG   Gau gu c
              ||| ||  ||||| |||||||||  ||| ||||||   ||| ||  
              cga ac  aaucg auuaggguc  cug ugacac   cua ca a
ucccguuccuuuaa   g  -a     u         -u   g      ccc   a  u 

Annotation confidence Not enough data
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Genome context
chr3: 90058975-90059079 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-216-1
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ssc-miR-216

Accession MIMAT0002130
Description Sus scrofa ssc-miR-216 mature miRNA
Evidence experimental
Illumina [1]


  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328