miRBase entry: ssc-mir-19a

Stem-loop ssc-mir-19a

Sus scrofa ssc-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
15 open access papers mention ssc-mir-19a
(23 sentences)


2046 reads, 635 reads per million, 14 experiments

    u  u                 --      ---    ag 
gcag cc cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

Annotation confidence Not enough data
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Genome context
chr11: 66610343-66610424 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ssc-mir-19a
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ssc-miR-19a

Accession MIMAT0002128
Description Sus scrofa ssc-miR-19a mature miRNA
Evidence experimental
cloned [2], Illumina [3]


  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328