miRBase entry: ssc-mir-181b-2

Stem-loop ssc-mir-181b-2


Accession
MI0002420
Description
Sus scrofa ssc-mir-181b-2 precursor miRNA

Literature search
24 open access papers mention ssc-mir-181b-2
(46 sentences)

Sequence

46 reads, 67 reads per million, 7 experiments
auggcugcacucAACAUUCAUUGCUGUCGGUGGGUUugagucugaaucaacucacugaucaaugaaugcaaacugcggaccaaaca
.((((((((.....(((((((((..(((((((((((.((.......)))))))))))))))))))))).....))))).)))....

Structure
---a   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUU ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 299324014-299324099 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-181b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-181b

Accession MIMAT0002126
Description Sus scrofa ssc-miR-181b mature miRNA
Sequence 13 - AACAUUCAUUGCUGUCGGUGGGUU - 36
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 19196471
    Cloning, characterization and expression analysis of porcine microRNAs
    Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
    BMC Genomics (2009) 10:65

  3. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  4. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  5. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100