Stem-loop ssc-mir-181b-2

Accession

MI0002420

Description

Sus scrofa ssc-mir-181b-2 precursor miRNA

Literature search

24 open access papers mention ssc-mir-181b-2
(46 sentences)

Sequence

46 reads, 18 reads per million, 7 experiments

auggcugcacucAACAUUCAUUGCUGUCGGUGGGUUugagucugaaucaacucacugaucaaugaaugcaaacugcggaccaaaca
.((((((((.....(((((((((..(((((((((((.((.......)))))))))))))))))))))).....))))).)))....

Structure

---a   -     cucAA         CU           u  gu 
    ugg cugca     CAUUCAUUG  GUCGGUGGGUU ga  c
    ||| |||||     |||||||||  ||||||||||| ||  u
    acc ggcgu     guaaguaac  uagucacucaa cu  g
acaa   a     caaac         --           -  aa 

Annotation confidence Not enough data

Genome context

chr1: 299324014-299324099 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-181b-2

Mature ssc-miR-181b

• Accession: MIMAT0002126
• Description: Sus scrofa ssc-miR-181b mature miRNA
• Sequence: 13 - AACAUUCAUUGCUGUCGGUGGGUU - 36
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19196471
   Cloning, characterization and expression analysis of porcine microRNAs
   Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
   BMC Genomics (2009) 10:65


3. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


4. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


5. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100