miRBase entry: ssc-mir-105-2

Stem-loop ssc-mir-105-2

Accession

MI0002411

Description

Sus scrofa ssc-mir-105-2 precursor miRNA

Literature search

1 open access papers mention ssc-mir-105-2
(1 sentences)

Sequence

1 reads, 1 reads per million, 1 experiments

ugugcaucguggUCAAAUGCUCAGACUCCUUGguggcugcuuaugcaccacggauguuugagcaugugcuauggugucua
...(((((((((.((.(((((((((((((...((((.(((....)))))))))).)))))))))).)))))))))))...

Structure

ugu         U  A          -   UUG    c   u 
   gcaucgugg CA AUGCUCAGAC UCC   gugg ugc u
   ||||||||| || |||||||||| |||   |||| |||  
   ugugguauc gu uacgaguuug agg   cacc acg a
auc         -  g          u   ---    -   u

Annotation confidence Not enough data

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Genome context

chrX: 141093619-141093698 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-105-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ssc-miR-105-2

Accession	MIMAT0002117
Description	Sus scrofa ssc-miR-105-2 mature miRNA
Sequence	13 - UCAAAUGCUCAGACUCCUUG - 32
Evidence	not_experimental

References

PubMed ID: 15885146
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
"Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
"BMC Genomics (2005) 6:70