Stem-loop ssc-mir-105-2

Accession

MI0002411

Description

Sus scrofa ssc-mir-105-2 precursor miRNA

Literature search

2 open access papers mention ssc-mir-105-2
(2 sentences)

Sequence

2679 reads, 9.0 reads per million, 85 experiments

ugugcaucguggUCAAAUGCUCAGACUCCUUGguggcugcuuaugcaCCACGGAUGUUUGAGCAUGUGCUAuggugucua
...(((((((((.((.(((((((((((((...((((.(((....)))))))))).)))))))))).)))))))))))...

Structure

ugu         U  A          -   UUG    c   u 
   gcaucgugg CA AUGCUCAGAC UCC   gugg ugc u
   ||||||||| || |||||||||| |||   |||| |||  
   ugugguAUC GU UACGAGUUUG AGG   CACC acg a
auc         -  G          U   ---    -   u 

Annotation confidence High

Genome context

chrX: 141093619-141093698 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-105-2

Mature ssc-miR-105-2-5p

• Accession: MIMAT0002117
• Description: Sus scrofa ssc-miR-105-2-5p mature miRNA
• Sequence: 13 - UCAAAUGCUCAGACUCCUUG - 32
• Evidence: not_experimental

Mature ssc-miR-105-3p

• Accession: MIMAT0052544
• Description: Sus scrofa ssc-miR-105-3p mature miRNA
• Sequence: 48 - CCACGGAUGUUUGAGCAUGUGCUA - 71
• Evidence: experimental ; unknown

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70