Stem-loop mtr-MIR166a

Accession

MI0001740

Description

Medicago truncatula mtr-MIR166a precursor miRNA

Literature search

12 open access papers mention mtr-MIR166a
(52 sentences)

Sequence

20213948 reads, 132426.0 reads per million, 111 experiments

cagacauacgaaggaguucaggGGAAUGGUGUCUGAUUCGAGAccauucgucacaaguaaacaguagccuugagaaugaucUCGGACCAGGCUUCAUUCCCCcuagcucauaguaucaugc
.....((((....(((((..(((((((((.(((((.(((((((.(((((.(((...((........))..)))))))).))))))).))))).)))))))))..)))))...)))).....

Structure

cagac    gaag     ca         U     A       c     g   caa  aaa 
     auac    gaguu  ggGGAAUGG GUCUG UUCGAGA cauuc uca   gu   c
     ||||    |||||  ||||||||| ||||| ||||||| ||||| |||   ||    
     uaug    cucga  CCCCUUACU CGGAC AGGCUcu guaag agu   cg   a
cguac    -aua     uc         U     C       a     -   -uc  aug 

Annotation confidence High

Genome context

chr1: 19059643-19059763 [-]

Mature mtr-miR166a-5p

• Accession: MIMAT0054740
• Description: Medicago truncatula mtr-miR166a-5p mature miRNA
• Sequence: 23 - GGAAUGGUGUCUGAUUCGAGA - 43
• Evidence: experimental ; unknown

Mature mtr-miR166a-3p

• Accession: MIMAT0001642
• Description: Medicago truncatula mtr-miR166a-3p mature miRNA
• Sequence: 82 - UCGGACCAGGCUUCAUUCCCC - 102
• Evidence: experimental ; 454 [2], Northern [2], Illumina [3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105