Stem-loop osa-MIR443

Accession

MI0001708

Description

Oryza sativa osa-MIR443 precursor miRNA

Literature search

2 open access papers mention osa-MIR443
(2 sentences)

Sequence

19827 reads, 83.0 reads per million, 137 experiments

cgucccauaaaaacaaacccaaaacuagaugugauauaucacAAUACAAUAAAUCUGGAUAGgagucuauccagauacuucuaUCUAGAUUUAUUGUACUGGGAuaugucacauauauucaguuuuauauuuguuuuuuuuuuggacg
(((((...(((((((((...((((((..((((((((((((.((.((((((((((((((((((((((((....)))..))))))))))))))))))))).)).))))))))))))......))))))...))))))))).....)))))

Structure

     --cau         ccc      ----ag            a  A                     --   a 
cgucc     aaaaacaaa   aaaacu      augugauauauc cA UACAAUAAAUCUGGAUAGgag  ucu u
|||||     |||||||||   ||||||      |||||||||||| || |||||||||||||||||||||  |||  
gcagg     uuuuuguuu   uuuuga      uacacuguauAG GU AUGUUAUUUAGAUCUaucuuc  aga c
     uuuuu         aua      cuuaua            G  C                     au   c 

Annotation confidence Medium

Genome context

3: 30021449-30021596 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR443

Mature osa-miR443-5p

• Accession: MIMAT0001606
• Description: Oryza sativa osa-miR443-5p mature miRNA
• Sequence: 43 - AAUACAAUAAAUCUGGAUAG - 62
• Evidence: experimental ; cloned [1]

Mature osa-miR443-3p

• Accession: MIMAT0055992
• Description: Oryza sativa osa-miR443-3p mature miRNA
• Sequence: 84 - UCUAGAUUUAUUGUACUGGGA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411