Stem-loop osa-MIR440

Accession

MI0001701

Description

Oryza sativa osa-MIR440 precursor miRNA

Literature search

4 open access papers mention osa-MIR440
(4 sentences)

Sequence

16717 reads, 72.0 reads per million, 138 experiments

auugcuauuguuggugcugggcucGUCCUGAUCACUAGGAGACUCUGaucaagcuaggccuaaacuuauguauuAGUGUCUCCUGAUGAUCGGGACAAggcuaacaccgaugagagcgau
((((((.(((((((((.(((.((.((((((((((.((((((((.(((((...((((((......)))).))))))).)))))))).)))))))))).)).))).))))))))).))))))

Structure

      a         c   g  c          C        U     caa  -    cc 
auugcu uuguuggug ugg cu GUCCUGAUCA UAGGAGAC CUGau   gc uagg  u
|||||| ||||||||| ||| || |||||||||| |||||||| |||||   || ||||   
uagcga aguagccac auc gA CAGGGCUAGU GUCCUCUG GAuua   ug auuc  a
      g         a   g  A          A        U     ---  u    aa 

Annotation confidence High

Genome context

11: 9164805-9164924 [-]

Mature osa-miR440-5p

• Accession: MIMAT0055991
• Description: Oryza sativa osa-miR440-5p mature miRNA
• Sequence: 25 - GUCCUGAUCACUAGGAGACUCUG - 47
• Evidence: experimental ; unknown

Mature osa-miR440-3p

• Accession: MIMAT0001599
• Description: Oryza sativa osa-miR440-3p mature miRNA
• Sequence: 75 - AGUGUCUCCUGAUGAUCGGGACAA - 98
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411