Stem-loop sbi-MIR167a

Accession

MI0001513

Description

Sorghum bicolor sbi-MIR167a precursor miRNA

Literature search

4 open access papers mention sbi-MIR167a
(8 sentences)

Sequence

1198893 reads, 15843.0 reads per million, 50 experiments

UGAAGCUGCCAGCAUGAUCUAgcucugagugaucacccgagaagaacaauaguucgagguggucucgccuugcuaGGUCAUGCUGCGGCAGCCUCA
(((.(((((((((((((((((((.....(.(((((((((((...........)))).))))))).).....)))))))))))))..)))))).)))

Structure

   A      --             ucuga u       -    aaga 
UGA GCUGCC  AGCAUGAUCUAgc     g gaucacc cgag    a
||| ||||||  |||||||||||||     | ||||||| ||||    c
ACU CGACGG  UCGUACUGGaucg     c cuggugg gcuu    a
   C      CG             uuccg u       a    gaua 

Annotation confidence High

Genome context

chr1: 4354010-4354105 [+]

Mature sbi-miR167a-5p

• Accession: MIMAT0001407
• Description: Sorghum bicolor sbi-miR167a-5p mature miRNA
• Sequence: 1 - UGAAGCUGCCAGCAUGAUCUA - 21
• Evidence: not_experimental

Mature sbi-miR167a-3p

• Accession: MIMAT0056347
• Description: Sorghum bicolor sbi-miR167a-3p mature miRNA
• Sequence: 76 - GGUCAUGCUGCGGCAGCCUCA - 96
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13