Stem-loop sbi-MIR156b

Accession

MI0001506

Description

Sorghum bicolor sbi-MIR156b precursor miRNA

Literature search

8 open access papers mention sbi-MIR156b
(28 sentences)

Sequence

8285506 reads, 47164.0 reads per million, 50 experiments

UGACAGAAGAGAGUGAGCACacacggugguuucuuagcaugagugccauguugggagcugugcguGCUCACUCUCUAUCUGUCA
((((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).)))))))

Structure

       -             a      gguu          a 
UGACAGA AGAGAGUGAGCAC cacggu    ucuuagcaug g
||||||| ||||||||||||| ||||||    |||||||||| u
ACUGUCU UCUCUCACUCGug gugucg    aggguuguac g
       A             c      ----          c 

Annotation confidence High

Genome context

chr3: 3415906-3415989 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR156b

Mature sbi-miR156b-5p

• Accession: MIMAT0001400
• Description: Sorghum bicolor sbi-miR156b-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: not_experimental

Mature sbi-miR156b-3p

• Accession: MIMAT0056340
• Description: Sorghum bicolor sbi-miR156b-3p mature miRNA
• Sequence: 66 - GCUCACUCUCUAUCUGUCA - 84
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13