Stem-loop sbi-MIR156c

Accession

MI0001505

Description

Sorghum bicolor sbi-MIR156c precursor miRNA

Literature search

8 open access papers mention sbi-MIR156c
(26 sentences)

Sequence

8286504 reads, 47219.0 reads per million, 50 experiments

UGACAGAAGAGAGUGAGCACacauggugccuuucuugcaugaugaaugaguggauucaugcucgaagcuaugcguGCUCACUUCUCUCUCUGUCA
((((((((((((((((((((.((((((....(((..((((((.............))))))..))))))))).)))))))).))))).)))))))

Structure

       -     -        a      gccu   uu      ugaau 
UGACAGA AGAGA GUGAGCAC cauggu    uuc  gcauga     g
||||||| ||||| |||||||| ||||||    |||  ||||||     a
ACUGUCU UCUCU CACUCGug guaucg    aag  cguacu     g
       C     U        c      ----   cu      uaggu 

Annotation confidence High

Genome context

chr3: 3416227-3416321 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR156c

Mature sbi-miR156c-5p

• Accession: MIMAT0001399
• Description: Sorghum bicolor sbi-miR156c-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: not_experimental

Mature sbi-miR156c-3p

• Accession: MIMAT0056339
• Description: Sorghum bicolor sbi-miR156c-3p mature miRNA
• Sequence: 76 - GCUCACUUCUCUCUCUGUCA - 95
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13