Stem-loop sbi-MIR156a

Accession

MI0001504

Description

Sorghum bicolor sbi-MIR156a precursor miRNA

Literature search

11 open access papers mention sbi-MIR156a
(36 sentences)

Sequence

8289480 reads, 47345.0 reads per million, 50 experiments

UGACAGAAGAGAGUGAGCACacggcgcgacgaacggcauaauauguaugucguccucgccgcguGCUCACUUCUCUUUCUGUCA
((((((((((((((((((((.(((((.(((((...((((...))))...)))))..))))).)))))))).)))).))))))))

Structure

        -    -        a     -c     acg    a 
UGACAGAA GAGA GUGAGCAC cggcg  gacga   gcau  
|||||||| |||| |||||||| |||||  |||||   |||| a
ACUGUCUU CUCU CACUCGug gccgc  cugcu   ugua  
        U    U        c     uc     gua    u 

Annotation confidence High

Genome context

chr4: 5326257-5326340 [-]

Mature sbi-miR156a-5p

• Accession: MIMAT0001398
• Description: Sorghum bicolor sbi-miR156a-5p mature miRNA
• Sequence: 1 - UGACAGAAGAGAGUGAGCAC - 20
• Evidence: not_experimental

Mature sbi-miR156a-3p

• Accession: MIMAT0056338
• Description: Sorghum bicolor sbi-miR156a-3p mature miRNA
• Sequence: 65 - GCUCACUUCUCUUUCUGUCA - 84
• Evidence: experimental ; unknown

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


3. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13