Stem-loop sbi-MIR166a

Accession

MI0001500

Description

Sorghum bicolor sbi-MIR166a precursor miRNA

Literature search

7 open access papers mention sbi-MIR166a
(15 sentences)

Sequence

15447526 reads, 423656.0 reads per million, 50 experiments

guGGAAUGUUGUCUGGUUCAAGGUcucgcuugugauuuaaggaugauuugugcaugcguaauuuuuauuccuugaaucuaugagaucUCGGACCAGGCUUCAUUCCCc
..((((((..(((((((((.((((((((.....(((((((((((((....(((....)))....))).))))))))))..)))))))).)))))))))..))))))..

Structure

gu      UU         A        cuugu          -   uuug   a 
  GGAAUG  GUCUGGUUC AGGUcucg     gauuuaagga uga    ugc u
  ||||||  ||||||||| ||||||||     |||||||||| |||    |||  
  CCUUAC  CGGACCAGG Ucuagagu     cuaaguuccu auu    aug g
cC      UU         C        ---au          u   uuua   c 

Annotation confidence High

Genome context

chr1: 17260549-17260656 [-]

Mature sbi-miR166a-5p

• Accession: MIMAT0056335
• Description: Sorghum bicolor sbi-miR166a-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGUUCAAGGU - 24
• Evidence: experimental ; unknown

Mature sbi-miR166a-3p

• Accession: MIMAT0001394
• Description: Sorghum bicolor sbi-miR166a-3p mature miRNA
• Sequence: 88 - UCGGACCAGGCUUCAUUCCC - 107
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


3. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13