Stem-loop sbi-MIR166b

Accession

MI0001499

Description

Sorghum bicolor sbi-MIR166b precursor miRNA

Literature search

6 open access papers mention sbi-MIR166b
(14 sentences)

Sequence

16095129 reads, 440858.0 reads per million, 50 experiments

gggGAAUGAUGUCCGGUCCGAAGAcgcugugcggcgaaagcggcggcggcuUCGGACCAGGCUUCAUUCCCC
(((((((((.(((.(((((((((.((((..((.((....)).)))))).))))))))).))).)))))))))

Structure

         U   C         A    gu  g  g 
gggGAAUGA GUC GGUCCGAAG cgcu  gc gc a
||||||||| ||| ||||||||| ||||  || ||  
CCCCUUACU CGG CCAGGCUuc gcgg  cg cg a
         U   A         g    --  g  a 

Annotation confidence High

Genome context

chr1: 7384211-7384282 [+]

Mature sbi-miR166b-5p

• Accession: MIMAT0056334
• Description: Sorghum bicolor sbi-miR166b-5p mature miRNA
• Sequence: 4 - GAAUGAUGUCCGGUCCGAAGA - 24
• Evidence: experimental ; unknown

Mature sbi-miR166b-3p

• Accession: MIMAT0001393
• Description: Sorghum bicolor sbi-miR166b-3p mature miRNA
• Sequence: 52 - UCGGACCAGGCUUCAUUCCCC - 72
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13