Stem-loop sbi-MIR166c

Accession

MI0001498

Description

Sorghum bicolor sbi-MIR166c precursor miRNA

Literature search

5 open access papers mention sbi-MIR166c
(14 sentences)

Sequence

16037103 reads, 438675.0 reads per million, 50 experiments

ggGGAAUGUUGUCUGGUCGGAGAccuaacaccgcgaaucauccauggagcagcaugcauggugguggaugguuUCGGACCAGGCUUCAUUCCCC
((((((((..((((((((.((((((...((((((....(((.((((......)))).)))))))))...)))))).))))))))..))))))))

Structure

        UU        G      uaa      gaau   c    ga 
ggGGAAUG  GUCUGGUC GAGAcc   caccgc    cau caug  g
||||||||  |||||||| ||||||   ||||||    ||| ||||   
CCCCUUAC  CGGACCAG CUuugg   guggug    gua guac  c
        UU        G      uag      ----   c    ga 

Annotation confidence High

Genome context

chr1: 76349131-76349224 [-]

Mature sbi-miR166c-5p

• Accession: MIMAT0056333
• Description: Sorghum bicolor sbi-miR166c-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGUCGGAGA - 23
• Evidence: experimental ; unknown

Mature sbi-miR166c-3p

• Accession: MIMAT0001392
• Description: Sorghum bicolor sbi-miR166c-3p mature miRNA
• Sequence: 74 - UCGGACCAGGCUUCAUUCCCC - 94
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13