Stem-loop sbi-MIR166d

Accession

MI0001497

Description

Sorghum bicolor sbi-MIR166d precursor miRNA

Literature search

5 open access papers mention sbi-MIR166d
(12 sentences)

Sequence

15470252 reads, 424185.0 reads per million, 50 experiments

ggGGAAUGUUGUCUGGCUCGAGGugcaggaacaugcagaucucaucggucuagauuguuguugaucUCGGACCAGGCUUCAUUCCCC
((((((((..((((((.(((((((.(((.((((..((((((.....))))).)..)))).)))))))))).))))))..))))))))

Structure

        UU      C       g   g    ug -     u 
ggGGAAUG  GUCUGG UCGAGGu cag aaca  c agauc c
||||||||  |||||| ||||||| ||| ||||  | ||||| a
CCCCUUAC  CGGACC GGCUcua guu uugu  g ucugg u
        UU      A       -   g    ua a     c 

Annotation confidence High

Genome context

chr4: 63914216-63914302 [-]

Mature sbi-miR166d-5p

• Accession: MIMAT0056332
• Description: Sorghum bicolor sbi-miR166d-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGCUCGAGG - 23
• Evidence: experimental ; unknown

Mature sbi-miR166d-3p

• Accession: MIMAT0001391
• Description: Sorghum bicolor sbi-miR166d-3p mature miRNA
• Sequence: 67 - UCGGACCAGGCUUCAUUCCCC - 87
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13