miRBase entry: ath-MIR159c

Stem-loop ath-MIR159c


Accession
MI0001085
Description
Arabidopsis thaliana ath-MIR159c precursor miRNA

Literature search
49 open access papers mention ath-MIR159c
(452 sentences)

Sequence

guguaacagaaggagcucccuuccuccaaaacgaagaggacaagauuugaggaacuaaaaugcagaaucuaagaguucaugucuuccucauagagagugcgcgguguuaaaagcuugaagaaagcacacuuuaaggggauugcacgaccucuuagauucucccucuuucucuacauaucauucucuucucuucgUUUGGAUUGAAGGGAGCUCCUuuucuucuuc
.......((((((((((((((((.((((((.(((((((((.(((((.((.(((........(.((((((((((((.((.(((..(((((.(((((.((((......((((....)))).....)))).))))).)))))..))).)).)))))))))))))........))).)).))).))...)))))))))))))))..)))))))))))))))).......

Structure
guguaac                -c      a         --c  -   u  a   acuaaaau c            u  a   cu     a     a    gcggug    a 
       agaaggagcucccuuc  uccaaa cgaagagga   aa gau ug gga        g agaaucuaagag uc ugu  uccuc uagag gugc      uuaa a
       ||||||||||||||||  |||||| |||||||||   || ||| || |||        | |||||||||||| || |||  ||||| ||||| ||||      ||||  
       uuuUCCUCGAGGGAAG  AGGUUU gcuucucuu   uu cua ac ucu        c ucuuagauucuc ag acg  agggg auuuc cacg      aguu g
cuucuuc                UU      -         cuc  a   u  a   cuuucucc -            c  c   uu     a     a    -aaaga    c 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context
chr2: 18994632-18994856 [+]

Database links

Mature ath-miR159c

Accession MIMAT0001015
Description Arabidopsis thaliana ath-miR159c mature miRNA
Sequence 195 - UUUGGAUUGAAGGGAGCUCCU - 215
Evidence experimental
454 [2]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799